Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NMB0013Conserved hypothetical protein; Identified by similarity to EGAD:90450; match to protein family HMM PF04323. (149 aa)    
Predicted Functional Partners:
NMB1543
Conserved hypothetical protein; Identified by similarity to GP:3402495; match to protein family HMM PF02486.
  
     0.696
NMB1634
Conserved hypothetical protein; Identified by similarity to GP:3402495; match to protein family HMM PF02486.
  
     0.693
mlp
Lipoprotein; Identified by similarity to EGAD:40759; match to protein family HMM PF04355.
  
     0.677
NMB0012
Conserved hypothetical protein; Identified by similarity to EGAD:30886; match to protein family HMM PF03741.
       0.671
NMB0710
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.667
fimB
Fimbrial assembly protein; Identified by similarity to EGAD:8572.
  
     0.659
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.645
NMB1533
H.8 outer membrane protein; Identified by similarity to EGAD:7135; match to protein family HMM PF00127.
  
     0.603
NMB0438
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
NMB0313
Conserved hypothetical protein; Identified by similarity to GP:3523136; match to protein family HMM PF04575; match to protein family HMM PF07719.
  
     0.564
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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