Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB0034Conserved hypothetical protein; Identified by similarity to EGAD:90733; match to protein family HMM PF03239. (279 aa)    
Predicted Functional Partners:
NMB0035
Conserved hypothetical protein; Identified by similarity to EGAD:90734; match to protein family HMM PF04302; Belongs to the EfeM/EfeO family.
  
 0.999
NMB0036
Conserved hypothetical protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.924
NMB0293
Putative TonB-dependent receptor; Identified by similarity to EGAD:48295; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
   
    0.800
hmbR
Hemoglobin receptor; Identified by similarity to EGAD:131251; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01786.
   
    0.800
NMB0033
Putative membrane-bound lytic murein transglycosylase A; Identified by similarity to GP:974447; match to protein family HMM PF03562; match to protein family HMM PF06725.
       0.486
NMB0588
ABC transporter, ATP-binding protein; Identified by similarity to EGAD:153448; match to protein family HMM PF00005.
   
    0.484
exbD
Biopolymer transport protein ExbD; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
   
    0.468
NMB0786
Conserved hypothetical protein; Identified by similarity to EGAD:91404; match to protein family HMM PF04261; match to protein family HMM TIGR01413.
 
  
 0.435
zupT
Conserved hypothetical protein; Mediates zinc uptake. May also transport other divalent cations (By similarity); Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
   
  
 0.432
exbB
Biopolymer transport protein ExbB; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity).
   
    0.429
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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