Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lipBCapsule polysaccharide modification protein LipB; Involved in the phospholipid modification of the capsular polysaccharide, a strong requirement for its translocation to the cell surface. (419 aa)    
Predicted Functional Partners:
lipA
Capsule polysaccharide modification protein LipA; Involved in the phospholipid modification of the capsular polysaccharide, a strong requirement for its translocation to the cell surface.
   
 0.969
ctrB
Capsule polysaccharide export inner-membrane protein CtrB; May form an ATP-driven capsule polysaccharide export apparatus, in association with the CtrC and CtrD proteins; Belongs to the BexC/CtrB/KpsE family.
 
 
 
 0.834
ctrD
Capsule polysaccharide export ATP-binding protein CtrD; Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus.
 
   
 0.830
ctrC
Capsule polysaccharide export inner-membrane protein CtrC; May form an ATP-driven capsule polysaccharide export apparatus, in association with the CtrB and CtrD proteins; Belongs to the ABC-2 integral membrane protein family.
 
   
 0.813
ctrA
Capsule polysaccharide export outer membrane protein CtrA; Involved in transport of capsular polysaccharides to the cell surface. May function as a membrane anchor for capsular polysaccharides. Possible porin properties; Belongs to the BexD/CtrA/VexA family.
 
   
 0.807
NMB0067
Polysialic acid capsule biosynthesis protein SiaD, truncation; Identified by similarity to GP:530041.
      
 0.772
rfaK
alpha-1,2-N-acetylglucosamine transferase; Identified by similarity to EGAD:40699; match to protein family HMM PF00534.
      
 0.605
rfaF
ADP-heptose--LPS heptosyltransferase II; Identified by similarity to EGAD:40767; match to protein family HMM PF01075; match to protein family HMM TIGR02195.
     
 0.538
NMB1399
IS1106 transposase; Identified by similarity to EGAD:5595; match to protein family HMM PF01609.
  
   
 0.501
rpsU
30S ribosomal protein S21; Identified by similarity to EGAD:97841; match to protein family HMM PF01165; match to protein family HMM TIGR00030.
   
    0.472
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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