Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB0113Hypothetical protein; Identified by Glimmer2; putative. (180 aa)    
Predicted Functional Partners:
NMB0114
Putative nitrogen regulation protein NtrY; Identified by similarity to EGAD:163355; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
     0.894
ntrX
Nitrogen assimilation regulatory protein NtrX; Identified by similarity to EGAD:5624; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
     0.871
NMB1954
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.770
NMB0667
Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.766
rsmB
16S RNA methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.764
porA
Outer membrane protein PorA; Serves as a slightly cation selective porin. Major antigen on the gonococcal cell surface and it may have pathogenic properties in addition to its porin activity.
  
     0.757
NMB0282
Ribonuclease II-related protein; Identified by similarity to EGAD:28723; match to protein family HMM PF00773.
  
     0.755
NMB0928
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.753
secE
Preprotein translocase SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.740
smg
Putative smg protein; Identified by similarity to EGAD:6532; match to protein family HMM PF04361; Belongs to the Smg family.
 
    0.734
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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