Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dadAD-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids. (418 aa)    
Predicted Functional Partners:
aspC
Aspartate aminotransferase; Identified by similarity to EGAD:28598; match to protein family HMM PF00155.
     
  0.900
hisC
Histidinol-phosphate aminotransferase; Identified by similarity to EGAD:156515; match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.900
tyrB
Aromatic-amino-acid aminotransferase; Identified by similarity to SP:P74861; match to protein family HMM PF00155.
     
  0.900
NMB1794
Citrate transporter; Identified by similarity to EGAD:45968; match to protein family HMM PF03600; match to protein family HMM TIGR00784.
   
  
 0.708
NMB1378
Conserved hypothetical protein; Identified by similarity to EGAD:29015; match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010.
   
  
 0.703
NMB2136
Peptide transporter; Identified by similarity to EGAD:108941; match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924.
  
  
 0.684
gloA
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
      
 0.670
NMB0177
Putative sodium/alanine symporter; Identified by similarity to EGAD:90049; match to protein family HMM PF01235; match to protein family HMM TIGR00835.
  
    0.621
NMB0388
Putative sugar transporter; Identified by similarity to EGAD:62114; match to protein family HMM PF07690.
      
 0.510
zupT
Conserved hypothetical protein; Mediates zinc uptake. May also transport other divalent cations (By similarity); Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
  
    0.468
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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