Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
farAFatty acid efflux system protein; Identified by similarity to EGAD:20365; match to protein family HMM PF00529. (384 aa)    
Predicted Functional Partners:
farB
Fatty acid efflux system protein; Identified by similarity to EGAD:19655; match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
 
 
 0.992
mtrE
Multidrug efflux pump channel protein; Identified by similarity to EGAD:17129; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 
 0.975
ybjZ
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.909
mtrC
Membrane fusion protein; Identified by similarity to EGAD:12931; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.885
mtrD
Multiple transferable resistance system protein MtrD; Identified by similarity to EGAD:152391; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
   
 0.873
NMB1435
Drug resistance translocase family protein; Identified by similarity to EGAD:20464; match to protein family HMM PF07690.
 
 
 0.826
NMB1737
Putative secretion protein; Identified by similarity to EGAD:40992; match to protein family HMM PF02321.
 
 
 0.806
NMB1400
ABC transporter family protein; Identified by similarity to GP:505571; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.
  
 
 0.769
NMB0320
Hypothetical protein; Identified by Glimmer2; putative.
       0.532
mtrA
Transcriptional regulator MtrA; Identified by similarity to EGAD:28074; match to protein family HMM PF00165.
   
  
 0.531
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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