Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB0495Replication protein; Identified by similarity to EGAD:24391; match to protein family HMM PF01051. (327 aa)    
Predicted Functional Partners:
NMB0900
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.800
NMB1757
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.638
NMB1762
Putative hemolysin activation protein HecB; Identified by similarity to EGAD:149243; match to protein family HMM PF03865.
   
    0.638
NMB0496
Hemolysin activator-related protein; Identified by similarity to EGAD:10212; match to protein family HMM PF03865.
       0.572
NMB0478
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.536
NMB0494
DNA helicase, truncation; Identified by similarity to SP:P03005.
  
    0.533
NMB0726
Type II restriction enzyme HgaI; Identified by similarity to EGAD:14414.
   
    0.484
NMB0899
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.484
NMB1549
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.484
NMB1760
Conserved hypothetical protein; Identified by similarity to EGAD:166833.
   
    0.472
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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