STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NMB0664Hypothetical protein; Identified by Glimmer2; putative. (64 aa)    
Predicted Functional Partners:
trpF
N-(5'-phosphoribosyl)anthranilate isomerase; Identified by similarity to EGAD:38562; match to protein family HMM PF00697; Belongs to the TrpF family.
   
    0.639
NMB2014
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.484
nspA
Outer membrane protein NspA; Identified by similarity to EGAD:137514; match to protein family HMM PF02462.
       0.462
NMB0665
Oxygen-independent coprophorphyrinogen III oxidase family protein; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.435
cytX
Probable hydroxymethylpyrimidine transporter CytX; Identified by similarity to EGAD:158421; match to protein family HMM PF02133; match to protein family HMM TIGR02358.
   
    0.426
NMB0755
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.410
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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