Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NMB0741Conserved hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (479 aa)    
Predicted Functional Partners:
NMB1828
Conserved hypothetical protein; Identified by similarity to GP:2738251; match to protein family HMM PF00756.
  
   
 0.800
NMB1349
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.699
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
   
 0.605
NMB0779
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.587
NMB0438
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.572
trmA
tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
  
     0.537
FxsA
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
NMB1440
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.487
NMB1681
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
NMB0853
Conserved hypothetical protein; Identified by similarity to EGAD:90623; match to protein family HMM PF07719.
  
    0.469
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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