Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pmbApmbA protein; Identified by similarity to EGAD:28167; match to protein family HMM PF01523. (443 aa)    
Predicted Functional Partners:
tldD
tldD protein; Identified by similarity to EGAD:30245; match to protein family HMM PF01523.
 
 
0.871
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
      
 0.717
NMB0840
Conserved hypothetical protein; Identified by similarity to EGAD:28166; match to protein family HMM PF04751; Belongs to the UPF0307 family.
  
    0.655
nrdB
Ribonucleoside-diphosphate reductase, beta subunit; Identified by similarity to EGAD:13866; match to protein family HMM PF00268.
     
 0.550
NMB0841
Hypothetical protein; Identified by Glimmer2; putative.
       0.441
NMB0283
Conserved hypothetical protein; Identified by similarity to EGAD:155656; match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.
   
    0.438
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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