Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fimTFimbrial protein FimT; Identified by similarity to SP:P13253; match to protein family HMM PF07963; match to protein family HMM TIGR02532. (222 aa)    
Predicted Functional Partners:
NMB0889
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.939
NMB0887
Putative type IV pilus assembly protein PilV; Identified by similarity to EGAD:38517; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.
  
  
 0.874
pilO
pilO protein; Identified by similarity to GP:1914829; match to protein family HMM PF04350.
 
  
 0.855
NMB0890
Type IV pilin-related protein; Identified by similarity to SP:P35645; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
    0.849
NMB0888
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.844
pilM
pilM protein; Identified by similarity to EGAD:151887; match to protein family HMM TIGR01175.
 
   
 0.826
pilP
pilP protein; Identified by similarity to EGAD:40689; match to protein family HMM PF04351.
  
  
 0.816
NMB2016
Type IV pilin-related protein; Identified by similarity to GP:2073462; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.769
pilN
pilN protein; Identified by similarity to EGAD:151888; match to protein family HMM PF05137.
 
  
 0.765
NMB0341
tspA protein; Identified by similarity to GP:3413497; match to protein family HMM PF01476.
  
     0.698
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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