Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NMB0888Hypothetical protein; Identified by Glimmer2; putative. (313 aa)    
Predicted Functional Partners:
NMB0887
Putative type IV pilus assembly protein PilV; Identified by similarity to EGAD:38517; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.
  
  
 0.970
NMB0889
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.952
fimT
Fimbrial protein FimT; Identified by similarity to SP:P13253; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.844
NMB0890
Type IV pilin-related protein; Identified by similarity to SP:P35645; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.773
NMB0547
Type IV pilin protein; Identified by similarity to EGAD:20241; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.553
NMB2016
Type IV pilin-related protein; Identified by similarity to GP:2073462; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.553
NMB1585
Transcriptional regulator, MarR family; Identified by similarity to GP:2791909; match to protein family HMM PF01047.
   
    0.426
pilO
pilO protein; Identified by similarity to GP:1914829; match to protein family HMM PF04350.
  
  
 0.413
pilP
pilP protein; Identified by similarity to EGAD:40689; match to protein family HMM PF04351.
   
  
 0.400
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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