Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB1003Hypothetical protein; Identified by Glimmer2; putative. (98 aa)    
Predicted Functional Partners:
NMB1004
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.786
NMB0230
Conserved hypothetical protein; Identified by similarity to EGAD:28721; match to protein family HMM PF02682; match to protein family HMM TIGR00370.
  
    0.780
NMB1005
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
NMB1006
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
NMB1002
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.668
NMB1007
Transcriptional regulator; Identified by similarity to EGAD:6473; match to protein family HMM PF01381.
  
    0.560
NMB1008
Hypothetical protein; Identified by Glimmer2; putative.
       0.548
NMB1009
Conserved hypothetical protein; Identified by similarity to EGAD:28463; Belongs to the peptidase S24 family.
       0.548
NMB0861
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.513
NMB1010
Hypothetical protein; Identified by Glimmer2; putative.
       0.499
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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