Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB1088Conserved hypothetical protein; Identified by similarity to GP:3127075; match to protein family HMM PF07411; Belongs to the UPF0339 family. (56 aa)    
Predicted Functional Partners:
NMB0109
Conserved hypothetical protein; Identified by similarity to EGAD:109565; match to protein family HMM PF01476.
  
   0.909
NMB1405
FrpA/C-related protein; Identified by similarity to EGAD:22554.
    
   0.606
NMB1565
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.606
NMB1870
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.606
NMB1089
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.478
NMB1090
Hypothetical protein; Identified by Glimmer2; putative.
       0.461
NMB1091
Hypothetical protein; Identified by Glimmer2; putative.
       0.461
NMB1092
Hypothetical protein; Identified by Glimmer2; putative.
       0.461
NMB1349
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.401
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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