Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB1092Hypothetical protein; Identified by Glimmer2; putative. (168 aa)    
Predicted Functional Partners:
NMB1091
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.858
NMB1094
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.821
NMB1090
Hypothetical protein; Identified by Glimmer2; putative.
       0.805
NMB0985
E16-related protein; Identified by similarity to EGAD:143986; match to protein family HMM PF06252.
 
    0.787
NMB1095
Conserved hypothetical protein; Identified by similarity to EGAD:28497; match to protein family HMM PF06074.
 
    0.784
NMB1096
Conserved hypothetical protein; Identified by similarity to EGAD:28498; match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
     0.783
NMB1101
Conserved hypothetical protein; Identified by similarity to EGAD:28494; match to protein family HMM PF07030.
 
     0.779
NMB1081
Bacteriophage transposase; Identified by similarity to EGAD:143678.
  
    0.777
NMB1083
Putative bacteriophage DNA transposition protein B; Identified by similarity to EGAD:28477.
  
     0.771
NMB1098
Putative I protein; Identified by similarity to EGAD:28500.
 
     0.767
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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