Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB1110Tail protein, 43 kDa; Identified by similarity to EGAD:94050; match to protein family HMM PF06893. (381 aa)    
Predicted Functional Partners:
NMB1109
Putative phage virion protein; Identified by similarity to EGAD:28510; match to protein family HMM PF07157.
 
    0.960
NMB1111
Putative baseplate assembly protein V; Identified by similarity to EGAD:28503; match to protein family HMM PF06890; match to protein family HMM TIGR01644.
 
    0.956
NMB1108
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.950
NMB1098
Putative I protein; Identified by similarity to EGAD:28500.
 
    0.792
NMB1104
Phage sheath protein; Identified by similarity to EGAD:28506; match to protein family HMM PF06274.
 
    0.792
NMB1114
Conserved hypothetical protein; Identified by similarity to EGAD:91160.
 
    0.791
NMB1101
Conserved hypothetical protein; Identified by similarity to EGAD:28494; match to protein family HMM PF07030.
 
    0.789
NMB1095
Conserved hypothetical protein; Identified by similarity to EGAD:28497; match to protein family HMM PF06074.
 
    0.773
NMB1092
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.761
NMB0985
E16-related protein; Identified by similarity to EGAD:143986; match to protein family HMM PF06252.
  
    0.754
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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