STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NMB1111Putative baseplate assembly protein V; Identified by similarity to EGAD:28503; match to protein family HMM PF06890; match to protein family HMM TIGR01644. (222 aa)    
Predicted Functional Partners:
NMB1109
Putative phage virion protein; Identified by similarity to EGAD:28510; match to protein family HMM PF07157.
 
    0.959
NMB1110
Tail protein, 43 kDa; Identified by similarity to EGAD:94050; match to protein family HMM PF06893.
 
    0.959
NMB1108
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.942
NMB1114
Conserved hypothetical protein; Identified by similarity to EGAD:91160.
 
    0.803
NMB1104
Phage sheath protein; Identified by similarity to EGAD:28506; match to protein family HMM PF06274.
 
    0.792
NMB1098
Putative I protein; Identified by similarity to EGAD:28500.
 
    0.787
NMB1101
Conserved hypothetical protein; Identified by similarity to EGAD:28494; match to protein family HMM PF07030.
 
    0.769
NMB1095
Conserved hypothetical protein; Identified by similarity to EGAD:28497; match to protein family HMM PF06074.
 
    0.764
NMB1092
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.757
NMB1094
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.742
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.