Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NMB1165Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to EGAD:6851; match to protein family HMM PF00106. (239 aa)    
Predicted Functional Partners:
NMB1166
Conserved hypothetical protein; Identified by similarity to EGAD:97074; match to protein family HMM PF01593.
       0.561
NMB1162
Hypothetical protein; Identified by Glimmer2; putative.
       0.466
NMB1163
Hypothetical protein; Identified by Glimmer2; putative.
       0.466
NMB1164
Hypothetical protein; Identified by Glimmer2; putative.
       0.466
NMB1453
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.434
fadD-1
long-chain-fatty-acid--CoA ligase; Identified by similarity to EGAD:105134; match to protein family HMM PF00501.
   
 
 0.407
fadD-2
long-chain-fatty-acid--CoA ligase; Identified by similarity to EGAD:141787; match to protein family HMM PF00501.
   
 
 0.407
NMB1161
Hypothetical protein; Identified by Glimmer2; putative.
       0.401
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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