Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NMB1620Conserved hypothetical protein; Identified by similarity to GP:3661475; match to protein family HMM PF02016; match to protein family HMM TIGR01409. (394 aa)    
Predicted Functional Partners:
NMB1619
Conserved hypothetical protein; Identified by similarity to EGAD:159687; match to protein family HMM PF01230.
       0.659
nagZ
Glycosyl hydrolase, family 3; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
  
 0.505
NMB0004
EpiH/GdmH-related protein; Identified by similarity to EGAD:132655; match to protein family HMM PF02698.
 
    0.482
mtrR
Trancscriptional regulator MtrR; Identified by similarity to EGAD:19994; match to protein family HMM PF00440.
  
     0.464
NMB1797
Identified by similarity to GP:3249049; match to protein family HMM PF02113; match to protein family HMM TIGR00666.
 
   
 0.428
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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