Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NMB1638Identified by similarity to EGAD:20220; match to protein family HMM PF00884; match to protein family HMM PF08019. (544 aa)    
Predicted Functional Partners:
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
   
 0.686
NMB1639
Hypothetical protein; Identified by Glimmer2; putative.
       0.568
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.568
NMB1637
Conserved hypothetical protein; Identified by similarity to EGAD:28537; match to protein family HMM PF00881.
       0.565
mdaB
Modulator of drug activity B; Identified by similarity to EGAD:90558; match to protein family HMM PF02525.
  
     0.476
NMB0977
Putative modulator of drug activity B; Identified by similarity to EGAD:90558; match to protein family HMM PF02525.
  
     0.472
NMB0378
Putative phosphate permease; Identified by similarity to EGAD:160513; match to protein family HMM PF01384.
      
 0.434
NMB1992
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.411
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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