Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NMB1850Hypothetical protein; Identified by Glimmer2; putative. (91 aa)    
Predicted Functional Partners:
aspA
Aspartate ammonia-lyase; Identified by similarity to GP:41008; match to protein family HMM PF00206; match to protein family HMM TIGR00839.
   
    0.800
NMB1852
Conserved hypothetical protein; Identified by similarity to EGAD:28177; match to protein family HMM PF04480.
  
    0.576
NMB1851
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
NMB1477
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.475
NMB0780
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.452
NMB1214
Identified by similarity to GP:2623258; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901.
   
    0.430
NMB1213
Putative lipoprotein.
   
    0.429
acp-2
Acyl carrier protein; Identified by similarity to EGAD:39783; match to protein family HMM PF00550.
   
    0.404
NMB1221
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.401
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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