Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NMB1880Putative ABC transporter, periplasmic solute-binding protein; Identified by similarity to EGAD:108974; match to protein family HMM PF01497. (321 aa)    
Predicted Functional Partners:
NMB1990
iron(III) ABC transporter, permease protein; Identified by similarity to EGAD:108968; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.953
NMB1991
iron(III) ABC transporter, permease protein; Identified by similarity to EGAD:108970; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.953
NMB1993
iron(III) ABC transporter, ATP-binding protein; Identified by similarity to EGAD:108972; match to protein family HMM PF00005.
 
  
 0.953
NMB1878
Transcriptional regulator, AraC family; Identified by similarity to GP:3127846; match to protein family HMM PF00165.
 
  
 0.879
NMB1879
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.878
NMB1877
Identified by similarity to EGAD:132306; match to protein family HMM PF00326; match to protein family HMM PF02897.
      
 0.688
NMB1881
Conserved hypothetical protein; Identified by similarity to EGAD:108081; match to protein family HMM PF07883.
      
 0.688
NMB1884
Conserved hypothetical protein; Identified by similarity to EGAD:156337; match to protein family HMM PF00581.
      
 0.688
NMB1645
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.676
NMB1647
Putative amino acid symporter; Identified by similarity to EGAD:107412; match to protein family HMM PF01235; match to protein family HMM TIGR00835.
      
 0.510
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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