STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NMB1961VacJ-related protein; Identified by similarity to EGAD:90986; match to protein family HMM PF04333. (275 aa)    
Predicted Functional Partners:
NMB1963
Conserved hypothetical protein; Identified by similarity to EGAD:163193; match to protein family HMM PF05494.
 
 
 
 0.949
NMB1964
Conserved hypothetical protein; Identified by similarity to EGAD:28106; match to protein family HMM PF02470.
 
  
 0.915
NMB1962
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.873
NMB1960
Hypothetical protein; Identified by Glimmer2; putative.
       0.820
NMB1959
Conserved hypothetical protein; Identified by similarity to EGAD:91226; match to protein family HMM PF03061; match to protein family HMM TIGR00051.
  
    0.786
NMB1958
Putative thioredoxin; Identified by similarity to EGAD:109028.
  
    0.774
NMB1965
Conserved hypothetical protein; Identified by similarity to EGAD:28097; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
   
 0.734
NMB1966
ABC transporter, ATP-binding protein; Identified by similarity to EGAD:28098; match to protein family HMM PF00005.
 
   
 0.607
porA
Outer membrane protein PorA; Serves as a slightly cation selective porin. Major antigen on the gonococcal cell surface and it may have pathogenic properties in addition to its porin activity.
  
 
 0.596
apbE
Thiamine biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
   
  
 0.588
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.