Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB1992Hypothetical protein; Identified by Glimmer2; putative. (208 aa)    
Predicted Functional Partners:
NMB1991
iron(III) ABC transporter, permease protein; Identified by similarity to EGAD:108970; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.641
NMB1990
iron(III) ABC transporter, permease protein; Identified by similarity to EGAD:108968; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.634
NMB1993
iron(III) ABC transporter, ATP-binding protein; Identified by similarity to EGAD:108972; match to protein family HMM PF00005.
  
    0.588
trmA
tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
  
     0.529
NMB0577
NosR-related protein; Identified by similarity to GP:2935358.
  
     0.493
NMB0580
Putative protein disulfide isomerase NosL; Identified by similarity to GP:2177177; match to protein family HMM PF05573.
  
     0.490
nosD
Copper ABC transporter, periplasmic copper-binding protein; Identified by similarity to EGAD:35473; match to protein family HMM PF05048.
  
     0.442
NMB1040
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.434
NMB1638
Identified by similarity to EGAD:20220; match to protein family HMM PF00884; match to protein family HMM PF08019.
  
    0.411
NMB1989
iron(III) ABC transporter, periplasmic binding protein; Identified by similarity to EGAD:108974; match to protein family HMM PF01497.
  
    0.409
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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