Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB1998Serine-type peptidase; Identified by similarity to GP:1408569; match to protein family HMM PF02395; match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414. (1431 aa)    
Predicted Functional Partners:
NMB0374
MafB-related protein; Identified by similarity to GP:4838555; match to protein family HMM PF06255.
   
  
 0.686
NMB0039
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.643
NMB1818
Putative lipopolysaccharide biosynthesis protein; Identified by similarity to EGAD:165571; match to protein family HMM PF01943.
      
 0.510
bcp
Bacterioferritin comigratory protein; Identified by similarity to EGAD:48892; match to protein family HMM PF00578.
      
 0.506
NMB0281
Peptidyl-prolyl cis-trans isomerase; Identified by similarity to EGAD:7686; match to protein family HMM PF00639.
    
 
 0.451
mgtE
Magnesium transporter; Acts as a magnesium transporter.
       0.429
NMB1994
Putative adhesin/invasin; Identified by similarity to GP:2735093; match to protein family HMM PF03895.
      
 0.422
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
       0.402
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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