STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yojHMalate:quinone oxidoreductase; Identified by similarity to EGAD:9906; match to protein family HMM PF06039; match to protein family HMM TIGR01320. (488 aa)    
Predicted Functional Partners:
gltA
Citrate synthase; Identified by similarity to EGAD:12765; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.
   
 
 0.969
fumB
Fumarate hydratase, class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.958
fumC
Fumarate hydratase, class II, aerobic; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.941
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
     
 0.940
sfcA
Malate oxidoreductase (NAD); Identified by similarity to GP:1799887; match to protein family HMM PF00390; match to protein family HMM PF03949.
  
 
 0.918
argH
Argininosuccinate lyase; Identified by similarity to EGAD:49512; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
    
 0.841
gabD
Succinate-semialdehyde dehydrogenase (NADP+); Identified by similarity to EGAD:16804; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family.
   
 
 0.832
NMB1353
Identified by similarity to EGAD:91347; match to protein family HMM PF00171.
   
 
 0.831
gdhA
Glutamate dehydrogenase, NADP-specific; Identified by similarity to GP:146126; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.817
gluD
Glutamate dehydrogenase, NAD-specific; Identified by similarity to EGAD:20751; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.812
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
Server load: high (84%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.