STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NMB2136Peptide transporter; Identified by similarity to EGAD:108941; match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924. (485 aa)    
Predicted Functional Partners:
NMB1794
Citrate transporter; Identified by similarity to EGAD:45968; match to protein family HMM PF03600; match to protein family HMM TIGR00784.
   
  
 0.689
NMB1378
Conserved hypothetical protein; Identified by similarity to EGAD:29015; match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010.
      
 0.687
dadA
D-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids.
  
  
 0.684
gloA
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
   
  
 0.568
dnaK
dnaK protein; Acts as a chaperone.
   
    0.473
NMB0227
Conserved hypothetical protein; Identified by similarity to EGAD:28718.
  
    0.468
NMB0536
Na+/H+ antiporter; Identified by similarity to EGAD:15401; match to protein family HMM PF03553; match to protein family HMM TIGR00931.
  
     0.464
pepN
Identified by similarity to EGAD:22470; match to protein family HMM PF01433; match to protein family HMM TIGR02414.
   
 
 0.434
gluP
Glucose/galactose transporter; Identified by similarity to EGAD:41134; match to protein family HMM PF07690; match to protein family HMM TIGR01272.
      
 0.421
NMB1161
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.401
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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