Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NMB2137Hypothetical protein; Identified by Glimmer2; putative. (70 aa)    
Predicted Functional Partners:
NMB0247
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.502
NMB0820
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.502
NMB1049
Putative transcriptional regulator; Identified by similarity to EGAD:14640; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
      
 0.502
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
      
 0.501
NMB1844
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.479
NMB0036
Conserved hypothetical protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
      
 0.478
NMB1746
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.476
NMB1274
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.472
NMB0786
Conserved hypothetical protein; Identified by similarity to EGAD:91404; match to protein family HMM PF04261; match to protein family HMM TIGR01413.
      
 0.466
NMB1221
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.466
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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