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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NMB2153Conserved hypothetical protein; Identified by similarity to EGAD:91869; match to protein family HMM PF01205. (203 aa)    
Predicted Functional Partners:
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to EGAD:40692; match to protein family HMM PF01012.
  
    0.646
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to EGAD:45711; match to protein family HMM PF00766.
  
    0.599
NMB0113
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.472
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
   
    0.472
rpmD
50S ribosomal protein L30; Identified by similarity to EGAD:29418; match to protein family HMM PF00327; match to protein family HMM TIGR01308.
   
    0.424
NMB1441
Putative O-methyltransferase; Identified by similarity to EGAD:48809; match to protein family HMM PF01596.
  
    0.413
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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