STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ39472.1Periplasmic chaperone for outer membrane proteins Skp. (228 aa)    
Predicted Functional Partners:
SFQ39455.1
Beta-barrel assembly machine subunit BamA.
 
    0.934
SFQ57036.1
Hypothetical protein.
  
    0.772
SFQ37483.1
Protein of unknown function.
  
     0.767
SFQ80097.1
Protein of unknown function.
  
     0.767
SFQ47639.1
Protein of unknown function.
  
     0.764
SFQ47577.1
Beta-barrel assembly machine subunit BamD.
 
   
 0.741
SFP91899.1
Response regulator receiver domain-containing protein.
  
     0.740
SFQ25293.1
Cell surface protein SprA.
  
     0.738
SFQ29614.1
Long-chain fatty acid transport protein.
  
     0.728
SFQ39421.1
Outer membrane protein beta-barrel domain-containing protein.
 
 
   0.727
Your Current Organism:
Siccationidurans arizonensis
NCBI taxonomy Id: 1227077
Other names: DSM 17870, Hymenobacter arizonensis, Hymenobacter arizonensis Reddy and Garcia-Pichel 2013, Hymenobacter sp. OR362-8, JCM 13504, S. arizonensis, strain OR362-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.