STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ67089.1Ribosomal large subunit pseudouridine synthase F; Belongs to the pseudouridine synthase RsuA family. (338 aa)    
Predicted Functional Partners:
SFP97915.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
  0.809
SFQ28861.1
Exodeoxyribonuclease-3.
  
    0.691
cmk
Cytidylate kinase.
 
  
 0.623
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.601
SFP88243.1
2-oxoisovalerate dehydrogenase E1 component.
    
  0.582
SFQ21041.1
2-oxoisovalerate dehydrogenase E1 component.
    
  0.582
SFQ67104.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.521
SFQ20361.1
23S rRNA pseudouridine955/2504/2580 synthase.
    
 0.414
SFQ39506.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
    
 0.414
SFQ74357.1
23S rRNA pseudouridine1911/1915/1917 synthase.
    
 0.414
Your Current Organism:
Siccationidurans arizonensis
NCBI taxonomy Id: 1227077
Other names: DSM 17870, Hymenobacter arizonensis, Hymenobacter arizonensis Reddy and Garcia-Pichel 2013, Hymenobacter sp. OR362-8, JCM 13504, S. arizonensis, strain OR362-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.