STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ76480.1RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)    
Predicted Functional Partners:
SFQ76458.1
Hypothetical protein.
 
     0.816
SFQ76470.1
Hypothetical protein.
       0.773
SFQ61043.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.771
SFQ80904.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SFP99903.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.768
SFQ40352.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
SFQ47055.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.768
SFQ58620.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.761
SFQ58674.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.758
SFP94173.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.750
Your Current Organism:
Siccationidurans arizonensis
NCBI taxonomy Id: 1227077
Other names: DSM 17870, Hymenobacter arizonensis, Hymenobacter arizonensis Reddy and Garcia-Pichel 2013, Hymenobacter sp. OR362-8, JCM 13504, S. arizonensis, strain OR362-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.