STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH19927.1ABC transporter, substrate-binding protein, QAT family; KEGG: pfc:PflA506_0804 1.7e-37 opuCC; glycine betaine/carnitine/choline ABC transporter, periplasmic glycine betaine/carnitine/choline-binding protein K05845; Psort location: CytoplasmicMembrane, score: 8.78. (329 aa)    
Predicted Functional Partners:
ERH19928.1
Choline transport system permease protein opuBB family protein; KEGG: saa:SAUSA300_0707 2.6e-34 osmoprotectant ABC transporter permease K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
ERH19930.1
Putative choline transport system permease protein opuBB; KEGG: saa:SAUSA300_0707 3.4e-30 osmoprotectant ABC transporter permease K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
ERH16967.1
ABC transporter, permease protein; KEGG: saa:SAUSA300_2392 1.5e-29 opuCb; glycine betaine/carnitine/choline ABC transporter K05846; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.996
ERH19929.1
KEGG: aai:AARI_28120 4.9e-136 osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC transporter ATP-binding subunit K05847; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.995
ERH16965.1
ABC transporter, ATP-binding protein; KEGG: bfa:Bfae_30040 1.4e-90 ABC-type proline/glycine betaine transporter ATPase K05847; Psort location: CytoplasmicMembrane, score: 9.96.
 
 0.972
ERH16966.1
ABC transporter, permease protein; KEGG: saa:SAUSA300_2390 8.1e-24 opuCd; glycine betaine/carnitine/choline transport system permease K05846; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.971
ERH16968.1
ABC transporter, substrate-binding protein, QAT family; KEGG: ssr:SALIVB_0960 3.0e-22 glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 
0.915
ERH16995.1
Hypothetical protein; KEGG: lxx:Lxx01060 9.8e-06 hemG; protoporphyrinogen oxidase; K00231 oxygen-dependent protoporphyrinogen oxidase.
  
    0.494
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
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