STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH19820.1Transcriptional regulator, TetR family. (197 aa)    
Predicted Functional Partners:
ERH19819.1
Transporter, major facilitator family protein; KEGG: mdo:100019640 4.1e-18 uncharacterized LOC100019640; K00623 choline O-acetyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.756
ERH18702.1
Transcriptional regulator, TetR family; KEGG: cnc:CNE_2c15950 0.00070 codA; cytosine deaminase; Psort location: Cytoplasmic, score: 7.50.
  
     0.572
ERH19821.1
LysR substrate binding domain protein; KEGG: ppw:PputW619_2081 9.4e-13 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.95; Belongs to the LysR transcriptional regulatory family.
   
   0.512
ERH19634.1
Transcriptional regulator, TetR family; KEGG: ncy:NOCYR_4665 6.7e-05 putative transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase); Psort location: Cytoplasmic, score: 7.50.
  
     0.470
ERH20296.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.457
ERH19905.1
Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 7.50.
  
     0.444
ERH16736.1
Transcriptional regulator, TetR family; KEGG: cnc:CNE_2c15950 0.00021 codA; cytosine deaminase.
  
     0.439
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.