STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH19115.1HAD hydrolase, family IIB; KEGG: efl:EF62_1592 2.3e-19 Cof-like hydrolase family protein K07024. (282 aa)    
Predicted Functional Partners:
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.846
ERH14219.1
FAD binding domain protein; KEGG: jde:Jden_2117 0. D-lactate dehydrogenase K06911; Psort location: CytoplasmicMembrane, score: 8.78.
    
  0.770
ERH19117.1
Hypothetical protein.
       0.554
ERH19114.1
KEGG: dsh:Dshi_1289 3.2e-36 glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
       0.407
ERH16810.1
KEGG: ahe:Arch_1263 4.9e-175 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; K01840 phosphomannomutase; Psort location: Cytoplasmic, score: 7.50.
  
 
  0.404
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
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