STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH18967.1uracil-DNA glycosylase, family 4; KEGG: krh:KRH_07960 1.7e-87 uracil-DNA glycosylase. (278 aa)    
Predicted Functional Partners:
ERH20251.1
KEGG: apb:SAR116_0400 8.5e-13 single-stranded DNA-binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
    
   0.598
ERH20116.1
KEGG: apb:SAR116_0400 1.2e-08 single-stranded DNA-binding protein K03111.
    
   0.598
ERH18966.1
KEGG: kse:Ksed_06520 1.1e-76 DNA-3-methyladenine glycosylase I K01246; Psort location: CytoplasmicMembrane, score: 9.55.
       0.533
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
     
 0.474
ERH16649.1
LysM domain protein; KEGG: krh:KRH_14960 4.3e-41 putative lysozyme.
   
   0.461
ERH15151.1
Helicase protein; KEGG: eca:ECA1589 0. lhr; ATP-dependent helicase Lhr K03724; Psort location: Cytoplasmic, score: 7.50.
 
     0.455
ERH19207.1
Universal bacterial protein YeaZ; KEGG: xce:Xcel_0675 4.8e-26 peptidase M22 glycoprotease; K14742 hypothetical protease; Psort location: Cytoplasmic, score: 7.50.
  
    0.433
ERH18655.1
KEGG: ahe:Arch_0269 1.6e-82 HhH-GPD family protein; K03575 A/G-specific adenine glycosylase; Psort location: Cytoplasmic, score: 7.50.
  
   
 0.410
ERH20230.1
ThiF family protein; KEGG: pmx:PERMA_0129 7.1e-41 molybdenum cofactor synthesis protein 3 (Molybdopterinsynthase sulfurylase) (MPT synthase sulfurylase); Psort location: Cytoplasmic, score: 9.95.
  
    0.401
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
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