STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH16996.1Hypothetical protein; KEGG: bqy:MUS_3662 3.3e-20 yvgT; thioredoxin reductase; Psort location: CytoplasmicMembrane, score: 10.00. (263 aa)    
Predicted Functional Partners:
ERH16995.1
Hypothetical protein; KEGG: lxx:Lxx01060 9.8e-06 hemG; protoporphyrinogen oxidase; K00231 oxygen-dependent protoporphyrinogen oxidase.
       0.466
ERH16800.1
Ribonuclease BN-like family protein; KEGG: azo:azo1818 6.3e-07 exoribonuclease II K07058; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.452
ERH16703.1
tryptophan--tRNA ligase; KEGG: ahe:Arch_0389 2.3e-129 tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.418
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.