STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH16813.1TIGR00730 family protein; KEGG: gvg:HMPREF0421_20965 1.5e-63 fmt2; methionyl-tRNA formyltransferase K06966; Psort location: Cytoplasmic, score: 7.50; Belongs to the LOG family. (254 aa)    
Predicted Functional Partners:
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
     
 0.743
ERH16812.1
KEGG: cga:Celgi_2541 1.2e-107 succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase; Psort location: Cytoplasmic, score: 7.50.
     
 0.727
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
      
 0.715
ERH16814.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.671
ERH16649.1
LysM domain protein; KEGG: krh:KRH_14960 4.3e-41 putative lysozyme.
   
  0.619
ERH14255.1
Glycosyltransferase, group 2 family protein; KEGG: hla:Hlac_0696 4.9e-15 glycosyl transferase family 2; K00721 dolichol-phosphate mannosyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.558
apt
Putative adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
    
  0.483
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
  0.481
ERH19069.1
KEGG: cfi:Celf_0243 1.1e-168 adenylosuccinate lyase; K01756 adenylosuccinate lyase; Psort location: Cytoplasmic, score: 7.50.
  
 
  0.455
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
    
  0.445
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
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