STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERH16607.1Iron-dependent repressor IdeR; Psort location: Cytoplasmic, score: 9.97. (256 aa)    
Predicted Functional Partners:
ERH16606.1
Putative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
     
 0.746
ERH19442.1
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
    
   0.662
ERH14283.1
Transcriptional regulator, Fur family; KEGG: apb:SAR116_1155 8.8e-11 ferric uptake regulation protein K03711; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family.
  
  
 0.618
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.500
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.494
ERH20139.1
Transcriptional regulator, Fur family; KEGG: rsa:RSal33209_0845 1.7e-20 catalase K03781; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family.
  
  
 0.485
ERH15336.1
Helicase protein; KEGG: hvo:HVO_1598 4.3e-09 rad25c; DNA repair helicase Rad25; Psort location: Cytoplasmic, score: 7.50.
 
     0.472
ERH19821.1
LysR substrate binding domain protein; KEGG: ppw:PputW619_2081 9.4e-13 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.95; Belongs to the LysR transcriptional regulatory family.
  
 
 0.468
ERH16605.1
Hypothetical protein.
       0.409
Your Current Organism:
Actinobaculum sp. F0552
NCBI taxonomy Id: 1227261
Other names: A. sp. oral taxon 183 str. F0552, Actinobaculum sp. oral taxon 183 str. F0552
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