STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERK51282.1KEGG: str:Sterm_0178 7.4e-172 penicillin-binding protein 2 K05515. (661 aa)    
Predicted Functional Partners:
ERK49347.1
Rod shape-determining protein RodA; KEGG: cco:CCC13826_0511 9.4e-46 histidinol-phosphate aminotransferase (imidazole acetol-phosphate transaminase) K05837; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 0.967
ERK55021.1
Cell cycle protein, FtsW/RodA/SpoVE family; KEGG: hiq:CGSHiGG_09345 3.0e-33 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K03588; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 0.894
ERK50046.1
Putative Mbl protein; KEGG: lru:HMPREF0538_21740 1.3e-78 ppx6; exopolyphosphatase K03569; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.821
ERK48905.1
KEGG: hpa:HPAG1_1318 4.4e-71 rod shape-determining protein MreB K03569; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.820
ERK55017.1
POTRA domain protein, FtsQ-type; KEGG: mmn:midi_01206 0.0016 ddlA; D-alanine-D-alanine ligase K01921; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.797
ERK48440.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.783
ERK52788.1
Hypothetical protein; KEGG: fnu:FN0525 1.1e-131 penicillin-binding protein; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
0.781
rnj
Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.725
ERK51280.1
RNA-binding protein, YhbY family; Psort location: Cytoplasmic, score: 8.96.
       0.719
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 0.649
Your Current Organism:
Leptotrichia sp. F0557
NCBI taxonomy Id: 1227268
Other names: L. sp. oral taxon 879 str. F0557, Leptotrichia sp. oral taxon 879 str. F0557
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