STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_01443COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (178 aa)    
Predicted Functional Partners:
D271_01438
Biotin synthase, putative.
       0.631
D271_01448
Transport protein; COG2252 Permeases.
       0.613
D271_00673
GNAT family acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
 
 0.595
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.571
D271_00135
COG0280 Phosphotransacetylase.
    
 0.476
D271_01433
Cytochrome b5; COG4892 Predicted heme/steroid binding protein.
       0.462
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.449
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
    
  0.435
D271_00838
COG1349 Transcriptional regulators of sugar metabolism.
    
   0.429
D271_02754
COG1349 Transcriptional regulators of sugar metabolism.
    
   0.429
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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