STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_01707COG1555 DNA uptake protein and related DNA-binding proteins. (180 aa)    
Predicted Functional Partners:
D271_01697
ComE operon protein 3; COG0658 Predicted membrane metal-binding protein.
 
  
 0.920
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.885
D271_01712
ATP-dependent protease La; COG3480 Predicted secreted protein containing a PDZ domain.
     0.882
D271_03540
ComF operon protein 1; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
   
  
 0.878
D271_01702
ComE operon protein 2; COG2131 Deoxycytidylate deaminase.
  
    0.803
D271_03165
ComG operon protein 1; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.762
D271_03160
ComG operon protein 2; COG1459 Type II secretory pathway, component PulF.
  
  
 0.752
cinA
Competence damage-inducible protein A; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
     
 0.729
holA
COG1466 DNA polymerase III, delta subunit.
       0.728
D271_00485
COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
  
  
 0.665
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.