STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_02299Prophage lysin; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Lj965. (315 aa)    
Predicted Functional Partners:
D271_02304
Phage-related holin (lysis protein).
       0.790
D271_02309
Hypothetical protein.
       0.777
D271_02324
COG5412 Phage-related protein.
 
     0.683
D271_02314
Hypothetical protein.
 
    0.614
D271_02339
Hypothetical protein.
 
     0.607
D271_02359
Hypothetical protein.
 
     0.552
D271_07280
N-acetylmuramoyl-L-alanine amidase; COG1388 FOG: LysM repeat.
    
 0.550
D271_07298
Autolysin; COG1705 Muramidase (flagellum-specific).
    
 0.550
D271_02319
COG4722 Phage-related protein.
       0.505
D271_02384
Phage portal protein, SPP1 Gp6-like.
 
     0.494
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.