STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_02359Hypothetical protein. (120 aa)    
Predicted Functional Partners:
D271_02339
Hypothetical protein.
 
     0.951
D271_02324
COG5412 Phage-related protein.
 
     0.931
D271_02314
Hypothetical protein.
 
    0.902
D271_02379
Hypothetical protein; COG5585 NAD+--asparagine ADP-ribosyltransferase.
 
    0.883
D271_02384
Phage portal protein, SPP1 Gp6-like.
 
    0.883
D271_02389
COG1783 Phage terminase large subunit.
 
    0.860
D271_02364
Prophage protein.
 
     0.854
D271_02394
COG3728 Phage terminase, small subunit.
 
    0.847
D271_02354
Hypothetical protein.
       0.819
D271_02344
Hypothetical protein.
       0.807
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.