STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_02494SOS-response repressor and protease LexA; COG1396 Predicted transcriptional regulators. (191 aa)    
Predicted Functional Partners:
D271_02484
Phage transcription repressor; COG1396 Predicted transcriptional regulators.
 
  
0.704
D271_02489
Hypothetical protein; COG2856 Predicted Zn peptidase.
       0.693
D271_05890
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
  
 
  0.505
D271_02499
Hypothetical protein.
       0.452
D271_02659
Acetyltransferase; COG2388 Predicted acetyltransferase.
  
     0.419
D271_02444
COG1061 DNA or RNA helicases of superfamily II.
  
    0.408
D271_00538
N-acetylmuramoyl-L-alanine amidase; COG5263 FOG: Glucan-binding domain (YG repeat).
  
     0.405
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.