STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_04950COG2148 Sugar transferases involved in lipopolysaccharide synthesis. (219 aa)    
Predicted Functional Partners:
D271_04960
Exopolysaccharide biosynthesis protein; COG0489 ATPases involved in chromosome partitioning.
 
 
 0.975
D271_00898
Chain length determinant protein; COG3944 Capsular polysaccharide biosynthesis protein.
 
 
 0.903
D271_04955
COG4464 Capsular polysaccharide biosynthesis protein.
  
  
 0.884
D271_04965
COG3944 Capsular polysaccharide biosynthesis protein.
  
  
 0.834
D271_04945
COG0438 Glycosyltransferase.
  
  
 0.786
D271_04940
Hypothetical protein.
       0.682
D271_00968
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.671
D271_04970
Hypothetical protein; COG1316 Transcriptional regulator.
     
 0.641
D271_04930
Group 1 family glycosyl transferase; COG0438 Glycosyltransferase.
  
  
 0.636
D271_04935
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.631
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.