STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_05885DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. (287 aa)    
Predicted Functional Partners:
D271_06655
Hypothetical protein; COG1461 Predicted kinase related to dihydroxyacetone kinase.
   0.994
D271_05435
DegV family protein; COG1307 Uncharacterized protein conserved in bacteria.
 
     0.720
D271_06660
COG1302 Uncharacterized protein conserved in bacteria.
 
    0.680
D271_05880
COG1846 Transcriptional regulators.
       0.678
D271_05890
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
       0.659
rex
Redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.450
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.