STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_06255Hypothetical protein; COG1388 FOG: LysM repeat. (201 aa)    
Predicted Functional Partners:
D271_05295
NLP/P60 protein; COG1388 FOG: LysM repeat.
 
 
 0.795
D271_01994
Hypothetical protein; COG1388 FOG: LysM repeat.
  
 
 0.766
D271_04184
COG2891 Cell shape-determining protein.
 
     0.710
D271_06265
COG4955 Uncharacterized protein conserved in bacteria.
 
     0.697
D271_06785
COG4485 Predicted membrane protein.
  
     0.682
D271_07280
N-acetylmuramoyl-L-alanine amidase; COG1388 FOG: LysM repeat.
  
 
 0.674
D271_07298
Autolysin; COG1705 Muramidase (flagellum-specific).
  
 
 0.674
D271_00678
Hypothetical protein.
  
     0.647
D271_05725
COG0860 N-acetylmuramoyl-L-alanine amidase.
 
  
 0.632
D271_06085
Hypothetical protein.
  
     0.595
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.