STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D271_07799COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (145 aa)    
Predicted Functional Partners:
D271_03130
COG0827 Adenine-specific DNA methylase.
  
     0.756
D271_07180
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.748
D271_00270
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.732
D271_00878
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.723
D271_07804
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.
     
 0.561
D271_07794
Hypothetical protein.
       0.556
D271_06230
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.464
D271_03605
Initiation-control protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.455
divIB
Cell division protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
  
     0.450
D271_03195
COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain.
  
    0.445
Your Current Organism:
Lactobacillus saerimneri
NCBI taxonomy Id: 1227363
Other names: L. saerimneri 30a, Lactobacillus saerimneri 30a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.