STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C446_01278Hypothetical protein. (315 aa)    
Predicted Functional Partners:
C446_13049
Hypothetical protein.
  
     0.642
C446_10375
COG3233 Predicted deacetylase.
  
     0.601
C446_06595
UvrD/REP helicase; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
  
     0.584
C446_12654
Hypothetical protein.
  
     0.566
C446_16205
COG2510 Predicted membrane protein.
  
     0.555
C446_01283
Hypothetical protein.
       0.543
C446_01288
Hypothetical protein.
       0.543
pfdA
Prefoldin subunit alpha; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
       0.529
rplX
COG2157 Ribosomal protein L20A (L18A).
       0.513
C446_06930
GAF domain-containing protein; COG2202 FOG: PAS/PAC domain.
  
     0.510
Your Current Organism:
Halobiforma nitratireducens
NCBI taxonomy Id: 1227454
Other names: H. nitratireducens JCM 10879, Halobiforma nitratireducens JCM 10879
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.